Spatial Transcriptomics Plus Topological Data Analysis: A Complete End-to-End Tutorial with squidpy and GUDHI
Build a real spatial transcriptomics pipeline on Visium mouse brain, then go one step past every tutorial: use persistent homology to find spatial structure that Moran's I misses. Every number here is reproducible from a fresh clone. Most spatial transcriptomics tutorials end at the same place. You
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